Structured information parsed from a single Mascot search result file Information about the search Search title UTC date and time User name User email address URI for result report File path to MS data Search type (from form) Mascot version Sequence database name Fasta file name Total number of entries in sequence database Total number of residues in sequence database Number of sequences after application of taxonomy filter Number of entries searched in error tolerant mode Number of queries Warning messages Search parameters Taxonomy filter Enzyme Maximum number of missed cleavages Fixed modifications ICAT experiment Variable modifications Peptide mass tolerance Peptide mass tolerance units Fragment mass tolerance Fragment mass tolerance units Peptide charge state Monoisotopic or average Protein mass window Type of instrument User defined parameters Report formatting parameters Significance threshold Max number of hits to report Use MudPIT protein scoring Ions score lower threshold Show all proteins that match the same set of peptides Show any proteins that match a sub-set of peptides Show peptide matches not assigned to protein hits Require proteins to include at least one bold, red match Cluster matches using the UniGene index for this species Mass values for elements, residues, termini, and variable modifications The search results Hits are numbered consecutively, but there may be no hits Each hit corresponds to one or more homologous proteins Description from Fasta title Mascot protein score Protein score significance threshold (PMF only) Expectation value corresponding to protein score (PMF only) Protein mass Number of peptide matches Percentage coverage Length in residues Calculated pI value Taxonomy Taxonomy ID Peptide matches not assigned to proteins Query level information Scan title peptol() qualifier seq() qualifier comp() qualifier tag() or etag() qualifier Sum of all the ions intensities Total number of ions Peak list for ions 1 as a string (any series) Peak list for ions 2 as a string (N-term series) Peak list for ions 3 as a string (C-term series) Peptide match details Experimental m/z Experimental Mr Experimental charge Calculated Mr Mass error (calculated Mr - experimental Mr) 1 based residue count of peptide start position 1 based residue count of peptide end position Number of missed cleavages Mascot ions score Homology threshold (MS/MS only) Identity threshold (MS/MS only) Expectation value corresponding to ions score Rank for this match, from 1 to 10 The preceding residue, - if peptide is N-term of protein Sequence The following residue, - if peptide is C-term of protein Frame number for translation of NA sequence Variable modifications required to obtain match Schema minor version number